RnoEX0082344 @ rn6
Exon Skipping
Gene
ENSRNOG00000018649 | Slc35c2
Description
solute carrier family 35 member C2 [Source:RGD Symbol;Acc:1311250]
Coordinates
chr3:161805427-161806210:-
Coord C1 exon
chr3:161806138-161806210
Coord A exon
chr3:161805597-161805765
Coord C2 exon
chr3:161805427-161805510
Length
169 bp
Sequences
Splice sites
3' ss Seq
CCGCACTGTCCCCCCTCTAGCGT
3' ss Score
7.89
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTACACAATGACCAAATCCTCTGCTGTGCTCTTTATCCTGATCTTCTCTCTGATCTTCAAGCTGGAGGAGCTG
Seq A exon
CGTGCAGCGCTGGTCCTGGTGGTCCTGCTCATTGCTGGCGGCCTCTTCATGTTTACCTATAAGTCCACGCAGTTCAACGTGGAGGGCTTTGCCTTGGTGCTGGGGGCTTCGTTCATTGGCGGCATCCGCTGGACCCTTACACAAATGCTTCTTCAGAAAGCTGATCTCG
Seq C2 exon
GTCTCCAGAATCCCATTGACACCATGTTCCACCTGCAGCCACTCATGTTTCTGGGGCTCTTCCCTCTCTTTGCCGTATTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018649_MULTIEX1-5/6=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0315111=TPT=PU(18.5=49.1)
C2:
PF0315111=TPT=FE(18.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAATGACCAAATCCTCTGCT
R:
TTCGAATACGGCAAAGAGAGGG
Band lengths:
154-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]