GgaEX0026287 @ galGal4
Exon Skipping
Gene
ENSGALG00000020939 | SLC35C2
Description
solute carrier family 35 member C2 [Source:RefSeq peptide;Acc:NP_001026036]
Coordinates
chr20:11074068-11074850:-
Coord C1 exon
chr20:11074778-11074850
Coord A exon
chr20:11074437-11074605
Coord C2 exon
chr20:11074068-11074151
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTGCTCTCACCCAGAGG
3' ss Score
6.86
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CTACACGATGACCAAATCCTCTGCCATTCTCTTCATCCTGTTGTTTTCATTGCTCTTCAAGCTGGAGGAAATG
Seq A exon
AGGGTGGCATTGGTGCTGGTGGTTGTGCTCATCGCTGGGGGGCTCTTCATGTTCACCTACAAGTCCACGCAGTTCAACACACAGGGGTTCATGCTGGTGCTCTGTGCCTCTTTCCTTGGGGGTGTTCGCTGGACTCTCACACAGATACTTATGCAGAAGGCTGAACTGG
Seq C2 exon
GGCTCCAGAACCCCATTGATATCATGTTTCACCTGCAGCCACTCATGTTCCTGGTGCTCTTCCCTCTGTTTGCAGTGTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020939_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0315111=TPT=PU(18.5=49.1)
C2:
PF0315111=TPT=FE(18.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACACGATGACCAAATCCTCTGC
R:
TGCAAACAGAGGGAAGAGCAC
Band lengths:
146-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]