GgaEX0026287 @ galGal3
Exon Skipping
Gene
ENSGALG00000020939 | SLC35C2
Description
NA
Coordinates
chr20:10678660-10679446:-
Coord C1 exon
chr20:10679374-10679446
Coord A exon
chr20:10679033-10679201
Coord C2 exon
chr20:10678660-10678747
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTGCTCTCACCCAGAGG
3' ss Score
6.86
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CTACACGATGACCAAATCCTCTGCCATTCTCTTCATCCTGTTGTTTTCATTGCTCTTCAAGCTGGAGGAAATG
Seq A exon
AGGGTGGCATTGGTGCTGGTGGTTGTGCTCATCGCTGGGGGGCTCTTCATGTTCACCTACAAGTCCACGCAGTTCAACACACAGGGGTTCATGCTGGTGCTCTGTGCCTCTTTCCTTGGGGGTGTTCGCTGGACTCTCACACAGATACTTATGCAGAAGGCTGAACTGG
Seq C2 exon
GGCTCCAGAACCCCATTGATATCATGTTTCACCTGCAGCCACTCATGTTCCTGGTGCTCTTCCCTCTGTTTGCAGTGTTTGAGGGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020939_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=FE(18.5=100)
A:
PF0089215=EamA=PD(14.6=33.3),PF0315111=TPT=PU(18.5=49.1)
C2:
PF0315111=TPT=FE(18.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATGACCAAATCCTCTGCC
R:
GCACCCTCAAACACTGCAAAC
Band lengths:
157-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]