HsaEX6078493 @ hg19
Exon Skipping
Gene
ENSG00000080189 | SLC35C2
Description
solute carrier family 35, member C2 [Source:HGNC Symbol;Acc:17117]
Coordinates
chr20:44983521-44984513:-
Coord C1 exon
chr20:44984441-44984513
Coord A exon
chr20:44983712-44983880
Coord C2 exon
chr20:44983521-44983604
Length
169 bp
Sequences
Splice sites
3' ss Seq
ACTGCTCCCCATCCTACCAGCGC
3' ss Score
8.02
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTACACAATGACCAAATCCTCAGCTGTCCTCTTCATCTTGATCTTCTCTCTGATCTTCAAGCTGGAGGAGCTG
Seq A exon
CGCGCGGCACTGGTCCTGGTGGTCCTCCTCATCGCCGGGGGTCTCTTCATGTTCACCTACAAGTCCACACAGTTCAACGTGGAGGGCTTCGCCTTGGTGCTGGGGGCCTCGTTCATCGGTGGCATTCGCTGGACCCTCACCCAGATGCTCCTGCAGAAGGCTGAACTCG
Seq C2 exon
GCCTCCAGAATCCCATCGACACCATGTTCCACCTGCAGCCACTCATGTTCCTGGGGCTCTTCCCTCTCTTTGCTGTATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080189-'9-17,'9-14,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=FE(16.4=100)
A:
PF0089215=EamA=PD(13.0=33.3),PF0315111=TPT=PU(18.5=49.1)
C2:
PF0315111=TPT=FE(18.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAATGACCAAATCCTCAGCT
R:
TTCAAATACAGCAAAGAGAGGGA
Band lengths:
154-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)