HsaEX6078493 @ hg38
Exon Skipping
Gene
ENSG00000080189 | SLC35C2
Description
solute carrier family 35 member C2 [Source:HGNC Symbol;Acc:HGNC:17117]
Coordinates
chr20:46354882-46355874:-
Coord C1 exon
chr20:46355802-46355874
Coord A exon
chr20:46355073-46355241
Coord C2 exon
chr20:46354882-46354965
Length
169 bp
Sequences
Splice sites
3' ss Seq
ACTGCTCCCCATCCTACCAGCGC
3' ss Score
8.02
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTACACAATGACCAAATCCTCAGCTGTCCTCTTCATCTTGATCTTCTCTCTGATCTTCAAGCTGGAGGAGCTG
Seq A exon
CGCGCGGCACTGGTCCTGGTGGTCCTCCTCATCGCCGGGGGTCTCTTCATGTTCACCTACAAGTCCACACAGTTCAACGTGGAGGGCTTCGCCTTGGTGCTGGGGGCCTCGTTCATCGGTGGCATTCGCTGGACCCTCACCCAGATGCTCCTGCAGAAGGCTGAACTCG
Seq C2 exon
GCCTCCAGAATCCCATCGACACCATGTTCCACCTGCAGCCACTCATGTTCCTGGGGCTCTTCCCTCTCTTTGCTGTATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080189-'16-25,'16-22,20-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089215=EamA=FE(18.3=100)
A:
PF0089215=EamA=PD(14.5=33.3),PF0315111=TPT=PU(18.5=49.1)
C2:
PF0315111=TPT=FE(18.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAATGACCAAATCCTCAGCT
R:
TTCAAATACAGCAAAGAGAGGGA
Band lengths:
154-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains