BtaEX6067422 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:1987923-1990572:-
Coord C1 exon
chr16:1990448-1990572
Coord A exon
chr16:1989263-1989380
Coord C2 exon
chr16:1987923-1988004
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTCACCGGCCGCCAGCTT
3' ss Score
4.19
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATTTACGTGGTAAAGGTGATGCGAGAGAATGCTCACGAGGCCGCTTACATCCAGCGGACATTTGAGGAGTTCCAGGAGTTACACAATAAGCTACGGCTGCTCTTCCCTTCTTCCCTCTTGCCCAG
Seq A exon
CTTCCCCAGTCGCTTCGTGATTGGCCGCTCGCGAGGAGAGGCAGGGGCCGAGCGGCGCCGGGAGGAGCTAAACGGATACATCTGGCACTTGGTCCACGCGGCCCCGGAGGTGGCCGAG
Seq C2 exon
TGTGATTTGGTGTACACCTTCTTCCACCCCCTGCCCAGGGATGAGAAGACGGCAGGCAGCAGCCTGGCTCCCAAGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633-'34-38,'34-37,35-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.357
Domain overlap (PFAM):
C1:
PF0078719=PX=FE(36.3=100)
A:
PF0078719=PX=FE(34.5=100)
C2:
PF0078719=PX=PD(8.8=35.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGTAAAGGTGATGCGAG
R:
CTGAGGACTTGGGAGCCAGG
Band lengths:
203-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]