RnoEX6044082 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49903992-49905849:+
Coord C1 exon
chr13:49903992-49904116
Coord A exon
chr13:49904889-49905006
Coord C2 exon
chr13:49905768-49905849
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGCCTTTCACTCTAGCTT
3' ss Score
9.58
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATCTATGTGGTGAAGGTGATGCGAGAGAACGCTCACGAGGCAACCTACATCCAGAGGACGTTCGAGGAGTTCCAGGAACTGCACAATAAGCTGCGCCTGCTCTTCCCTTCCTCCTTCCTGCCCAG
Seq A exon
CTTCCCTAGTCGGTTTGTGATTGGCCGCTCCCGGGGAGAGGCAGTGGCTGAGAGGCGGAAGGAGGAGCTAAATGGCTACATCTGGCACTTGATTCATGCAGCCCCTGAAGTGGCTGAG
Seq C2 exon
TGTGACCTGGTATATACTTTCTTCCATCCTCTGCCCCGCGATGAGAAGACTTCAGGCCCTAGCCCAGCCCCGAAGTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-'43-42,'43-40,45-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
PF0078719=PX=FE(36.3=100)
A:
PF0078719=PX=FE(34.5=100)
C2:
PF0078719=PX=PD(8.8=35.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGTGAAGGTGATGCGAG
R:
CTGATGACTTCGGGGCTGGG
Band lengths:
203-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]