DreEX0055535 @ danRer10
Exon Skipping
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23360103-23361608:-
Coord C1 exon
chr11:23361481-23361608
Coord A exon
chr11:23360980-23361097
Coord C2 exon
chr11:23360103-23360196
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCAATGGGCTTTTCCCACAGCTT
3' ss Score
8.35
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
TCTTATGTTGTAAAAGTGGAGCGGGAAGGTCAGCAGGGCTCACCAACATTGGTCCAGAGGACATTTGAGGAGTTTAATGAACTTCATAGTAAACTGCAGCTCATCTTCCCTTCCTCAAAACTACCAAG
Seq A exon
CTTCCCCAGCCGCTTTGTGATTGGTCGCTCTCGAGGGGAGGCCCTGGCAGACAGGAGGAAAGATGAGCTAAATGGATATGTTTGGCATTTGATACATGCTGCTCAAGAGGTGGCACAG
Seq C2 exon
TGTGACCTGATCTACACCTTCTTTCACCCCCTACCAAGAGACGAGCGGGCAGGAAGTGTGGGAAATGTTGTCAATACACTACATAAACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927-'37-35,'37-34,38-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.188
Domain overlap (PFAM):
C1:
PF0078719=PX=FE(36.8=100)
A:
PF0078719=PX=FE(34.2=100)
C2:
PF0078719=PX=PD(8.8=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGTAAAAGTGGAGCGGGA
R:
CTGTTGGTTTATGTAGTGTATTGACA
Band lengths:
218-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]