GgaEX1043804 @ galGal4
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1734305-1734817:-
Coord C1 exon
chr26:1734693-1734817
Coord A exon
chr26:1734505-1734622
Coord C2 exon
chr26:1734305-1734386
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTGTCTGTGCCCTTTGACAGCTT
3' ss Score
8.42
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
Exon sequences
Seq C1 exon
ACCTACGTGGTGAAGGTGAAACGGGAGAGCCCGAGCGAGGTGACCTTTGTGCAGCGCACCTTTGAGGAGTTCCAGGAGTTGCACAACAAGCTGCGCCTGCTCTTCCCCTCCTCGCTGCTGCCCAG
Seq A exon
CTTCCCCAGCAGGTTCATTATCGGCCGGTCACGAGGAGAGGCGGTGGCTGAAAGGAGGAAAGAAGAACTCAATGGTTACATCTGGCACCTCATCCATGCTGCCCCCGAGGTGGCCGAG
Seq C2 exon
TGTGACCTCATCTACACCTTTTTCCACCCGCTGCCCAGGGATGAGAAAGCAGCCAGCACCAACCCGGCCCCAAAGCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-'31-40,'31-37,33-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.464
Domain overlap (PFAM):
C1:
PF0078719=PX=FE(36.6=100)
A:
PF0078719=PX=FE(34.8=100)
C2:
PF0078719=PX=PD(8.9=35.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGAAGGTGAAACGGGAG
R:
CTTTGGGGCCGGGTTGGT
Band lengths:
194-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]