MmuEX6027388 @ mm10
Exon Skipping
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:133101330-133103434:+
Coord C1 exon
chr1:133101330-133101454
Coord A exon
chr1:133102280-133102397
Coord C2 exon
chr1:133103353-133103434
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGCCTCTCACACTAGCTT
3' ss Score
7.74
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTATATGTGGTGAAGGTGATGCGAGAGAATGCTCACGAGGCGACATACATCCAGAGGACATTCGAGGAGTTCCAGGAACTGCACAATAAGCTGCGCCTGCTCTTCCCTTCTTCCTTCCTGCCCAG
Seq A exon
CTTCCCTAGCCGGTTTGTGATTGGCCGCTCCCGGGGAGAGGCAGTGGCTGAGAGGAGGAAGGAGGAGTTAAATGGCTACATCTGGCACCTGATTCATGCAGCCCCTGAGGTGGCTGAG
Seq C2 exon
TGTGATCTGGTGTATACTTTCTTCCACCCCCTGCCCCGAGATGAGAAGGCTTCAGGCCCCAGCCCAGCTCCGAAGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-'48-50,'48-47,54-50=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.464
Domain overlap (PFAM):
C1:
PF0078719=PX=FE(36.3=100)
A:
PF0078719=PX=FE(34.5=100)
C2:
PF0078719=PX=PD(8.8=35.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGTGAAGGTGATGCGAG
R:
CTGAGGACTTCGGAGCTGGG
Band lengths:
203-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types