GgaEX1043804 @ galGal3
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1586354-1586866:-
Coord C1 exon
chr26:1586742-1586866
Coord A exon
chr26:1586554-1586671
Coord C2 exon
chr26:1586354-1586435
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTGTCTGTGCCCTTTGACAGCTT
3' ss Score
8.42
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
Exon sequences
Seq C1 exon
ACCTACGTGGTGAAGGTGAAACGGGAGAGCCCGAGCGAGGTGACCTTTGTGCAGCGCACCTTTGAGGAGTTCCAGGAGTTGCACAACAAGCTGCGCCTGCTCTTCCCCTCCTCGCTGCTGCCCAG
Seq A exon
CTTCCCCAGCAGGTTCATTATCGGCCGGTCACGAGGAGAGGCGGTGGCTGAAAGGAGGAAAGAAGAACTCAATGGTTACATCTGGCACCTCATCCATGCTGCCCCCGAGGTGGCCGAG
Seq C2 exon
TGTGACCTCATCTACACCTTTTTCCACCCGCTGCCCAGGGATGAGAAAGCAGCCAGCACCAACCCGGCCCCAAAGCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-'30-37,'30-34,32-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.464
Domain overlap (PFAM):
C1:
PF0078719=PX=FE(36.6=100)
A:
PF0078719=PX=FE(34.8=100)
C2:
PF0078719=PX=PD(8.9=35.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGAAGGTGAAACGGGAG
R:
CTTTGGGGCCGGGTTGGT
Band lengths:
194-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]