HsaEX0047526 @ hg19
Exon Skipping
Gene
ENSG00000133056 | PIK3C2B
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:HGNC Symbol;Acc:8972]
Coordinates
chr1:204397267-204400921:-
Coord C1 exon
chr1:204400797-204400921
Coord A exon
chr1:204399049-204399166
Coord C2 exon
chr1:204397267-204397348
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGCCTACGCTGCCACGCCAGCTT
3' ss Score
1.92
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATATATGTGGTAAAGGTGATGCGAGAGAACACTCACGAGGCCACCTACATCCAGCGGACCTTTGAGGAGTTCCAGGAATTACACAATAAGTTGCGGCTGCTCTTCCCTTCTTCCCACTTGCCCAG
Seq A exon
CTTCCCTAGTCGCTTCGTGATCGGCCGCTCCCGGGGAGAGGCGGTGGCCGAGCGGCGGAGGGAGGAGCTAAACGGTTACATCTGGCACTTGATCCACGCACCCCCTGAGGTGGCCGAG
Seq C2 exon
TGTGATTTGGTGTACACCTTCTTCCACCCACTGCCCCGGGATGAGAAGGCTATGGGCACCAGCCCAGCTCCTAAGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.464
Domain overlap (PFAM):
C1:
PF0078719=PX=FE(36.3=100)
A:
PF0078719=PX=FE(34.5=100)
C2:
PF0078719=PX=PD(8.8=35.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTAAAGGTGATGCGAGA
R:
CTGAGGACTTAGGAGCTGGGC
Band lengths:
202-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)