BtaEX6068755 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015325 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr16:43276552-43279054:+
Coord C1 exon
chr16:43276552-43276660
Coord A exon
chr16:43277350-43277582
Coord C2 exon
chr16:43278854-43279054
Length
233 bp
Sequences
Splice sites
3' ss Seq
TGCCTTCCTGTTTTTTCCAGCCA
3' ss Score
9.4
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATGAGTCAAGAGGAGTCTACTCGCTTCTATGATCAGCTGAACCATCACATCTTTGAACTGGTGTCCAGCTCAGATGCCAATGAGAGGAAAGGTGGCATTTTGGCCATAG
Seq A exon
CCAGCCTCATAGGAGTGGAAGGTGGGAATGCCACTCGAATTGGAAGATTTGCTAACTACCTTCGGAACCTCCTTCCCTCCAACGACCCAGTTGTCATGGAAATGGCATCCAAGGCCATCGGTCGGCTCGCCATGGCAGGGGACACTTTCACTGCTGAGTATGTGGAGTTTGAGGTGAAGCGAGCCCTGGAATGGCTGGGTGCTGACCGCAATGAGGGCCGGAGACACGCGGCT
Seq C2 exon
GTCCTGGTGCTCCGTGAGCTGGCCATCAGCGTCCCCACCTTCTTCTTCCAGCAAGTGCAGCCCTTCTTTGATAATATTTTTGTGGCCGTGTGGGACCCCAAACAGGCCATCCGGGAAGGAGCTGTCGCCGCCCTTCGTGCCTGTCTGATCCTCACCACCCAGCGGGAGCCAAAAGAGATGCAGAAGCCGCAGTGGTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015325-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.017 C2=0.075
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=FE(23.7=100)
A:
PF136461=HEAT_2=FE(50.7=100)
C2:
PF136461=HEAT_2=PD(2.6=6.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAAGAGGAGTCTACTCGCT
R:
TGCGGCTTCTGCATCTCTTTT
Band lengths:
297-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]