DreEX6051519 @ danRer10
Exon Skipping
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46302962-46307560:-
Coord C1 exon
chr8:46307452-46307560
Coord A exon
chr8:46305168-46305400
Coord C2 exon
chr8:46302962-46303162
Length
233 bp
Sequences
Splice sites
3' ss Seq
TGTAATATGCATCTATCCAGTGA
3' ss Score
3.96
5' ss Seq
GCGGTGCGT
5' ss Score
8.66
Exon sequences
Seq C1 exon
CTGAGCCAAGATGAAGCCACCACTTTCTACGATGAACTGAACCACCACATTTTTGAGTTGGTTTCCAGCTCAGATGTGAATGAGAAAAAAGGCGGTATCCTTGCCATAG
Seq A exon
TGAGCCTGATTGGAGTGGAGGGAGGAAATGCCACCCGTATCAGCCGCTTTGCCAACTATTTGCGGAACCTGCTTCCGTCCAGTGACTCAGTGGTCATGGAGATGGCCTCTAAAGCCATGGGTCACCTGTCCATGGCGGGAGACACCTTCACTGCAGAGTATGTGGAGTTTGAGGTGAAGAGAGCTCTGGAGTGGCTGGGAGCAGACAGGAATGAAGGCAGACGACATGCAGCG
Seq C2 exon
GTGCTGGTGTTACGAGAACTGGCTGTCAGCGCACCTACATTCTTTTTCCAGCAGGTGCAGCCATTCTTTGATAACATTTTTTATGCAGTGTGGGACTCCAAACAGGCCATTCGTGAGGGCGCAGTATCTGCTCTCAGAGCTTGTTTGATCCTTACCACTCAGAGAGAGACCAAAGAGATGCAGAAACCACAGTGGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=FE(23.7=100)
A:
PF136461=HEAT_2=FE(50.7=100)
C2:
PF136461=HEAT_2=PD(2.6=6.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGATGAAGCCACCACTT
R:
CCACTGTGGTTTCTGCATCTCT
Band lengths:
300-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]