RnoEX0056484 @ rn6
Exon Skipping
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165268078-165269845:+
Coord C1 exon
chr5:165268078-165268186
Coord A exon
chr5:165268828-165269060
Coord C2 exon
chr5:165269645-165269845
Length
233 bp
Sequences
Splice sites
3' ss Seq
CACCTCTGCTTCTTTTCTAGCCA
3' ss Score
8.33
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATGAGTCAGGAGGAGTCTACTCGCTTCTATGACCAGCTGAACCATCACATTTTTGAACTGGTTTCCAGCTCAGACGCCAATGAGAGGAAGGGTGGCATCTTGGCCATTG
Seq A exon
CCAGCCTCATTGGAGTGGAAGGTGGGAATTCCACCAGGATTGGCAGATTTGCCAACTACCTTCGGAACCTCCTCCCCTCAAGTGATCCAGTTGTCATGGAGATGGCATCCAAGGCCATTGGCCGCCTTGCAATGGCAGGGGACACTTTCACTGCTGAGTATGTGGAGTTTGAAGTGAAGCGAGCCTTGGAGTGGCTGGGTGCTGACCGAAATGAGGGCCGGAGACATGCAGCT
Seq C2 exon
GTCCTCGTTCTCCGTGAGCTGGCCATCAGCGTCCCCACCTTCTTCTTCCAGCAAGTTCAGCCCTTCTTTGACAACATTTTTGTGGCTGTGTGGGACCCCAAGCAGGCCATCCGTGAAGGAGCTGTGGCTGCCCTTCGTGCCTGTCTGATTCTTACCACGCAGCGGGAGCCGAAGGAGATGCAGAAGCCTCAGTGGTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615-'3-7,'3-4,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=FE(23.5=100)
A:
PF136461=HEAT_2=FE(50.3=100)
C2:
PF136461=HEAT_2=PD(2.6=6.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGAGGAGTCTACTCGCT
R:
GAGGCTTCTGCATCTCCTTCG
Band lengths:
295-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]