GgaEX1037527 @ galGal3
Exon Skipping
Gene
ENSGALG00000003339 | MTOR
Description
NA
Coordinates
chr21:4191326-4193566:-
Coord C1 exon
chr21:4193542-4193566
Coord A exon
chr21:4191898-4192130
Coord C2 exon
chr21:4191326-4191526
Length
233 bp
Sequences
Splice sites
3' ss Seq
ACTGCTCCTTTTCTCTACAGCAA
3' ss Score
10.51
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGGAAGGGTGGCATTTTGGCTATAG
Seq A exon
CAAGCCTTATTGGTGTTGAAGGAGGTAACGCCACCCGTATCGGCAGGTTTGCAAACTATCTGAGGAACCTTTTGCCATCCAATGATCCTGTTGTAATGGAAATGGCTTCCAAGGCTATCGGGCGGCTTGCAATGGCTGGTGACACCTTCACAGCTGAGTATGTGGAGTTTGAGGTGAAACGTGCTCTGGAATGGCTGGGGGCTGACAGGAATGAAGGTCGAAGACATGCAGCT
Seq C2 exon
GTTCTTGTACTGCGTGAGCTGGCAATCAGTGTGCCTACCTTCTTCTTCCAACAAGTGCAGCCATTCTTTGACAATATTTTTGTGGCTGTGTGGGATCCCAAGCAGGCCATTCGAGAGGGAGCCGTTTCTGCCTTAAGAGCCTGCCTTATCCTCACCACTCAGCGGGAACCAAAAGAAATGCAGAAACCTCAGTGGTACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.090
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGGGTGGCATTTTGGC
R:
CCACTGAGGTTTCTGCATTTCT
Band lengths:
220-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]