MmuEX6097921 @ mm10
Exon Skipping
Gene
ENSMUSG00000028991 | Mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:MGI Symbol;Acc:MGI:1928394]
Coordinates
chr4:148453022-148454969:+
Coord C1 exon
chr4:148453022-148453130
Coord A exon
chr4:148453758-148453990
Coord C2 exon
chr4:148454552-148454969
Length
233 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGCTTTCTTTTCTAGCCA
3' ss Score
10.16
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATGAGTCAGGAGGAGTCTACTCGCTTCTATGACCAGCTGAACCATCACATTTTTGAACTGGTTTCCAGCTCAGATGCCAATGAGAGGAAGGGTGGCATCTTGGCCATCG
Seq A exon
CCAGCCTCATAGGAGTGGAAGGTGGGAATTCCACCAGAATTGGCAGATTTGCCAACTACCTTCGAAACCTCCTCCCCTCAAGCGATCCAGTTGTCATGGAAATGGCGTCCAAGGCCATTGGCCGCCTGGCGATGGCAGGGGACACTTTCACTGCTGAATATGTGGAGTTTGAAGTGAAGCGAGCCTTGGAGTGGCTGGGTGCTGACCGAAATGAGGGCCGGAGACATGCCGCT
Seq C2 exon
GTCCTCGTTCTCCGTGAGCTGGCCATCAGTGTCCCCACCTTCTTCTTCCAGCAAGTTCAGCCCTTCTTTGACAACATTTTTGTGGCTGTGTGGGACCCCAAGCAGGCCATCCGGGAAGGCGCTGTAGCGGCCCTTCGTGCCTGTCTGATTCTCACCACGCAGCGGGAACCAAAGGAAATGCAGAAGCCTCAGTGGTACCGGGTGAGAGATGGGTCCACGCAGCCACTAGCGAAGCACTTTGGCCTGGAGAGCTGCAGCTGGCCATAGAGCAGGCCTTACATCTGTTTGAGCTTGGCACGGCTCTCTCCTGCTCACTGTGATTCTGTTGTTACTATATTGTGTTTTCTTAGGACAGATGTAGTGGTAGTCACACTATTATTTTATGCATCTCTATCAATAAAAATGTATCAATTAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028991-'3-10,'3-5,5-10=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=FE(23.2=100)
A:
PF136461=HEAT_2=FE(49.7=100)
C2:
PF136461=HEAT_2=PD(2.6=4.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTCCAGCTCAGATGCCAA
R:
CTCTCCAGGCCAAAGTGCTTC
Band lengths:
301-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types