Special

DmeEX6006823 @ dm6

Exon Skipping

Gene
Description
The gene Target of rapamycin is referred to in FlyBase by the symbol DmelTor (CG5092, FBgn0021796). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 2L:13004480..13013197. Its molecular function is described by 6 unique terms, many of which group under: binding; transferase activity; protein binding; transferase activity, transferring phosphorus-containing groups; protein serine/threonine kinase activity. It is involved in the biological process described with 34 unique terms, many of which group under: transmembrane receptor protein tyrosine kinase signaling pathway; enzyme linked receptor protein signaling pathway; cellular response to organic substance; positive regulation of wound healing; dendrite morphogenesis. 44 alleles are reported. The phenotypes of these alleles manifest in: plasma membrane bounded cell projection; neuron projection; cell projection; cell cycle; cellular process. The phenotypic classes of alleles include: cell size defective; phenotype; sterile; cell cycle defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-18 hour embryonic stages, during early pupal stages.
Coordinates
chr2L:13004480-13005997:+
Coord C1 exon
chr2L:13004480-13005011
Coord A exon
chr2L:13005067-13005287
Coord C2 exon
chr2L:13005431-13005997
Length
221 bp
Sequences
Splice sites
3' ss Seq
TTTAACGTCTTCCCTTTCAGAGT
3' ss Score
11.8
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
Exon sequences
Seq C1 exon
TCGGCAGCGGCTGCAATAAATTTCCGTAAAAACCGAAGTAATCCGCAATTAAAGAAAGCAAAGGACCTGCATCCGTGTGAGATCGTTCGGCACCGGTGCCGGCACATGAAATCCTATCGAGTGACCAGTGGAACAGTGCGTACAGCGCCCCGGGGCAACTGAAAAGATAACCTCCAAAGTCCGTAGACAGCAGGCAGATGCACCTGCTCCACCCTTTCCCCTCCCAAATGCAAGTGAAAATCGCGTTTAAATAGTGAATAAACCCTGCCCAGCCATGTCGACGACGTCGGTGGTGCAGCAGTTCGTCAACGGGCTTAAGTCCCGCAACCGGAATGTACAGAACAAGGCAACCCAGGATCTGCTCTTCTATGTGAAGACCGAGCTACGCGAAATGTCCCAGGAGGAGCTGGCCCAATTTTTCGACGAGTTCGACCATCACATTTTCACGATGGTGAATGCGACAGATATCAACGAGAAAAAAGGCGGTGCCCTGGCCATGA
Seq A exon
AGTGCCTGATTAACTGCGAGGGCAGTCTTACTGCCAGGAAGGGCATTTCGCCCTATCTCAACCGCCTGCGCGATCTTCTGCTAATCAACGATGTGTCCGTCATGGAGATTGCCGCCCGCTCCCTGGTCAAATTGGCCAACATGCCCACCTCCAAGGGCGCCGATTCCTTCGACTTTGATATTAAGAAGGCTTTTGAGGTGCTCAGAGGCGAGAGACAAGAG
Seq C2 exon
TACCGCCGCCATTCAGCCGTCTTTATCCTCCGTGAGCTGGCTATCGCCTTGCCCACATACTTCTACCAGCACATCCTGACCTTCTTCGAGGTTATCTTTAACGCCATCTTCGATCCCAAACCTGCTATACGAGAGTCAGCTGGCGAGGCTTTGAGGGCGGCTTTGATTGTCACCGCTCAGCGAGAGAGCACCAAGCAGTCCAGTGAACCACAGTGGTACAGAATCTGCTATGACGAGGCGAATGGAAGCTTCAATGCAGACTTGGGCTCTAGCAAGGATCAGAAAGGCGTGACCCGAGACGATCGCATTCACGGTGGCCTCGTCGTCTTCAACGAGCTCTTTCGCTGTGCCAATGCCACCTGGGAGCGGCGCTACACGTCTCTGAAGACGCTGTTCCCCAAGACCCAACACAATAAGTTCCTGGAGGCCAGCAGTTCGTCGAGTATGGGTTCCCAGCTGAATACTCTAGTGCCGCGGCTAAAGGTGCCCTTCATTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0021796-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:
FBpp0307598


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
FBpp0080003


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCGAGCTACGCGAAATG
R:
ACAATCAAAGCCGCCCTCAAA
Band lengths:
297-518
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)