GgaEX1037527 @ galGal4
Exon Skipping
Gene
ENSGALG00000003339 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr21:4190657-4192981:-
Coord C1 exon
chr21:4192873-4192981
Coord A exon
chr21:4191229-4191461
Coord C2 exon
chr21:4190657-4190857
Length
233 bp
Sequences
Splice sites
3' ss Seq
ACTGCTCCTTTTCTCTACAGCAA
3' ss Score
10.51
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGAGCCAGGAGGAGTCCACCAGGTTTTATGATCAGCTGAACCATCACATTTTTGAACTGGTCTCTAGCTCTGATGCAAATGAAAGGAAGGGTGGCATTTTGGCTATAG
Seq A exon
CAAGCCTTATTGGTGTTGAAGGAGGTAACGCCACCCGTATCGGCAGGTTTGCAAACTATCTGAGGAACCTTTTGCCATCCAATGATCCTGTTGTAATGGAAATGGCTTCCAAGGCTATCGGGCGGCTTGCAATGGCTGGTGACACCTTCACAGCTGAGTATGTGGAGTTTGAGGTGAAACGTGCTCTGGAATGGCTGGGGGCTGACAGGAATGAAGGTCGAAGACATGCAGCT
Seq C2 exon
GTTCTTGTACTGCGTGAGCTGGCAATCAGTGTGCCTACCTTCTTCTTCCAACAAGTGCAGCCATTCTTTGACAATATTTTTGTGGCTGTGTGGGATCCCAAGCAGGCCATTCGAGAGGGAGCCGTTTCTGCCTTAAGAGCCTGCCTTATCCTCACCACTCAGCGGGAACCAAAAGAAATGCAGAAACCTCAGTGGTACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339-'1-4,'1-1,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.090
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=FE(23.7=100)
A:
PF136461=HEAT_2=FE(50.7=100)
C2:
PF136461=HEAT_2=PD(2.6=6.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCCAGGAGGAGTCCAC
R:
CTGCATTTCTTTTGGTTCCCGC
Band lengths:
292-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]