BtaEX6069616 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013191 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr16:52687206-52691521:-
Coord C1 exon
chr16:52691474-52691521
Coord A exon
chr16:52687756-52687971
Coord C2 exon
chr16:52687206-52687430
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATCTTCCACCCCACACGCAGCGT
3' ss Score
5.57
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ACAAACCTGGGACCCACTTCACGCCAGTGCCCCCAACACCTCCGGATG
Seq A exon
CGTGCCGAGGAATGCTGTGTGGCTTCGGCGCTGTCTGCGAGCCCAGCGCAGACGAGCCGGGCCGAGCCTCCTGCGTGTGCAAGAAGAGCTCCTGCCCCAGCGTGGTGGCGCCCGTGTGCGGCTCGGATGCCTCCACCTACAGCAACGAGTGCGAGCTGCAGCGGGCGCAGTGCAGCCAGCAGAGGCGCATCCGTTTGCTGCGCCGCGGGCCCTGCG
Seq C2 exon
GGACCCGGGACCCCTGCTCCAATGTCACCTGCAGCTTTGGCAGCACCTGTGTGCCTTCTGCGGATGGACTGACAGCCACGTGCCTGTGCCCTGCCACGTGCCTGGGGGCCCCGGAAGGCCCTGTGTGCGGCAGCGACGGCAGTGACTACCCCAGCGAGTGCCAGCTCTTACGCCACGCCTGTGCCCACCAAGAGAACATCTTCAAGAAGTTCGACGGTCCTTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013191-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0314610=NtA=PD(1.6=11.8)
A:
PF0764810=Kazal_2=WD(100=56.2)
C2:
PF0764810=Kazal_2=WD(100=51.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCTGGGACCCACTTCAC
R:
GCAAGGACCGTCGAACTTCTT
Band lengths:
271-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]