MmuEX6098663 @ mm10
Exon Skipping
Gene
ENSMUSG00000041936 | Agrn
Description
agrin [Source:MGI Symbol;Acc:MGI:87961]
Coordinates
chr4:156179098-156185135:-
Coord C1 exon
chr4:156185088-156185135
Coord A exon
chr4:156179393-156179608
Coord C2 exon
chr4:156179098-156179322
Length
216 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGGTCTAAACTCAGTGT
3' ss Score
5.22
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ACAAACCTGGGATCCACTTCACAGCAGCGCCTTCTATGCCTCCTGATG
Seq A exon
TGTGCAGGGGAATGTTATGTGGCTTTGGTGCTGTGTGTGAACCTAGTGTTGAGGATCCAGGCCGGGCCTCCTGTGTGTGCAAGAAGAATGTCTGCCCTGCTATGGTAGCTCCTGTGTGTGGCTCAGATGCTTCCACCTATAGCAACGAGTGTGAGCTACAGCGTGCACAGTGCAACCAGCAACGGCGCATCCGCCTACTCCGCCAAGGGCCATGTG
Seq C2 exon
GGTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTTTCGGTAGTACCTGTGTACCTTCAGCCGATGGACAGACCGCCTCGTGTCTGTGTCCTACAACCTGCTTTGGGGCCCCTGATGGCACAGTGTGTGGCAGTGATGGTGTTGACTACCCTAGTGAGTGCCAGCTGCTCCGTCATGCCTGTGCCAACCAGGAGCACATCTTTAAGAAGTTCGATGGTCCTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041936-'19-18,'19-11,24-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0314610=NtA=PD(1.6=11.8)
A:
PF0005016=Kazal_1=WD(100=65.8)
C2:
PF0764810=Kazal_2=WD(100=60.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGATCCACTTCACAGCA
R:
CACAAGGACCATCGAACTTCT
Band lengths:
268-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types