RnoEX6024918 @ rn6
Exon Skipping
Gene
ENSRNOG00000020205 | Agrn
Description
agrin [Source:RGD Symbol;Acc:2067]
Coordinates
chr5:173604366-173610420:-
Coord C1 exon
chr5:173610373-173610420
Coord A exon
chr5:173604660-173604875
Coord C2 exon
chr5:173604366-173604590
Length
216 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGGTCTAAACTCAGTAT
3' ss Score
3.93
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ACAAACCTGGAATCCACTTCACACCAGCGCCTCCTACGCCTCCTGATG
Seq A exon
TATGCAGGGGAATGTTATGTGGCTTTGGTGCTGTGTGTGAACCTAGTGTTGAGGATCCAGGCCGTGCCTCCTGTGTGTGCAAGAAGAATGCTTGCCCTGCTACGGTGGCTCCTGTGTGTGGCTCAGATGCCTCCACCTATAGCAACGAGTGCGAGCTGCAGCGCGCGCAGTGCAACCAGCAACGGCGCATCCGCCTGCTTCGCCAAGGGCCATGTG
Seq C2 exon
GGTCCCGGGACCCCTGTGCCAACGTGACCTGCAGTTTCGGTAGTACCTGTGTACCTTCGGCTGACGGACAGACTGCCTCATGTCTGTGTCCTACAACCTGCTTCGGGGCCCCTGATGGCACAGTGTGTGGCAGTGACGGTGTTGACTACCCTAGTGAATGCCAGCTGCTTAGTCATGCCTGTGCCAGCCAGGAGCACATCTTCAAGAAGTTCAATGGTCCTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020205-'10-5,'10-3,13-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0314610=NtA=PD(5.9=11.8)
A:
PF0005016=Kazal_1=WD(100=65.8)
C2:
PF0005016=Kazal_1=WD(100=68.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAATCCACTTCACACCA
R:
CACAAGGACCATTGAACTTCTTGA
Band lengths:
268-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]