DreEX0012144 @ danRer10
Exon Skipping
Gene
ENSDARG00000079388 | agrn
Description
agrin [Source:ZFIN;Acc:ZDB-GENE-030131-1033]
Coordinates
chr23:23741033-23815299:+
Coord C1 exon
chr23:23741033-23741071
Coord A exon
chr23:23794910-23795125
Coord C2 exon
chr23:23815075-23815299
Length
216 bp
Sequences
Splice sites
3' ss Seq
TGATGTCTGTGTCTCCTTAGGTT
3' ss Score
11.89
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
ATAAACCTGTTCACTTCACACCGGCACCTCCTCCTGATG
Seq A exon
GTTGCAGAGGGAAGTTGTGCGGATTTGGAGCGGTGTGTGAGAGAGACCAAGCTGACCCATCTAAAGGAGAGTGTGTGTGTAAGAAGATTGTGTGTACATCTGTGGTGGCGCCAGTGTGCGGATCTGACTCCTCCACCTATTCCAATGAGTGTGAGCTGGAGAAGGCTCAGTGCAATACACAGAGACGCATCAAGGTGATGCGCAAAGGCCCCTGCG
Seq C2 exon
CCCTCAAGGACCCGTGCAGTGAGGTAACCTGTAGCTTTGGCAGCACCTGCATCCAGTCATCGGATGGTCTGTCCGCCAAGTGTATGTGTCCTCTGAGCTGTGAAAACGTCCCCAAGCATGTGGTGTGTGGCAGTGACGGCCTGGACTACCAAAGCGAATGTGAACTCAACATGAAGGCCTGCGCCACTCAGAAGAACATCCGTGTGCATCACCAGGGCCGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079388_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0314610=NtA=PD(10.5=14.3)
A:
PF0764810=Kazal_2=WD(100=56.2)
C2:
PF0764810=Kazal_2=WD(100=56.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGTTCACTTCACACCGG
R:
CGGCCCTGGTGATGCACA
Band lengths:
256-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]