HsaEX0003161 @ hg38
Exon Skipping
Gene
ENSG00000188157 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr1:1035277-1043457:+
Coord C1 exon
chr1:1035277-1035324
Coord A exon
chr1:1040665-1040880
Coord C2 exon
chr1:1043239-1043457
Length
216 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCCTACCCGCCCCAGCGT
3' ss Score
4.71
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATAAACCCGGGACCCACTTCACTCCAGTGCCTCCGACGCCTCCTGATG
Seq A exon
CGTGCCGGGGAATGCTGTGCGGCTTCGGCGCCGTGTGCGAGCCCAACGCGGAGGGGCCGGGCCGGGCGTCCTGCGTCTGCAAGAAGAGCCCGTGCCCCAGCGTGGTGGCGCCTGTGTGTGGGTCGGACGCCTCCACCTACAGCAACGAATGCGAGCTGCAGCGGGCGCAGTGCAGCCAGCAGCGCCGCATCCGCCTGCTCAGCCGCGGGCCGTGCG
Seq C2 exon
ACCAGGCCCCGTCCCCATGCCTCGGGGTGCAGTGTGCATTTGGGGCGACGTGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATGCCTGCAGGCGTGCTCGAGCCTCTACGATCCTGTGTGCGGCAGCGACGGCGTCACATACGGCAGCGCGTGCGAGCTGGAGGCCACGGCCTGTACCCTCGGGCGGGAGATCCAGGTGGCGCGCAAAGGACCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188157_MULTIEX1-1/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.165 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0314610=NtA=PD(10.5=11.8)
A:
PF0764810=Kazal_2=WD(100=56.2)
C2:
PF0764810=Kazal_2=WD(100=55.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAACCCGGGACCCACTTCA
R:
CACAGGGTCCTTTGCGCG
Band lengths:
267-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development