GgaEX1007037 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2735239-2744220:-
Coord C1 exon
chr21:2744173-2744220
Coord A exon
chr21:2736348-2736563
Coord C2 exon
chr21:2735239-2735463
Length
216 bp
Sequences
Splice sites
3' ss Seq
CCCCCCATCTCTGTCCGCAGCCT
3' ss Score
10.96
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
ACAAGCCCAATAGCTATTTTACCCAGACCCCGCCGACCCCTCGAGATG
Seq A exon
CCTGCCGAGGGATGCTGTGTGGGTTCGGGGCGGTGTGCGAGCGCAGCCCCACTGACCCCTCCCAAGCCTCCTGTGTCTGCAAGAAGACAGCTTGCCCTGTGGTGGTGGCTCCTGTCTGCGGCTCCGACTATTCCACCTACAGCAACGAGTGTGAGCTGGAGAAAGCCCAGTGCAACCAGCAGAGGCGGATCAAGGTCATCAGCAAGGGACCATGTG
Seq C2 exon
GCTCCAAGGACCCCTGTGCAGAGGTGACGTGCAGCTTTGGCAGCACGTGCGTCCGCTCTGCAGATGGCCAGACGGCCAGGTGTGTGTGCCCCGCATCCTGCAGCGGTGTGGCTGAGAGCATCGTCTGCGGCAGTGATGGCAAGGACTACCGCAGTGAGTGCGACCTCAACAAGCACGCCTGTGACAAGCAGGAGAATGTCTTCAAGAAGTTTGATGGAGCCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'16-16,'16-15,19-16
Average complexity
S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005016=Kazal_1=WD(100=76.7)
C2:
PF0005016=Kazal_1=WD(100=73.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAATAGCTATTTTACCCAGACCC
R:
CGCAGGCTCCATCAAACTTCT
Band lengths:
268-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]