BtaEX6069617 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013191 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr16:52686893-52687971:-
Coord C1 exon
chr16:52687756-52687971
Coord A exon
chr16:52687206-52687430
Coord C2 exon
chr16:52686893-52687117
Length
225 bp
Sequences
Splice sites
3' ss Seq
CCACCTTGCTCTGCCCACAGGGA
3' ss Score
11.06
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
CGTGCCGAGGAATGCTGTGTGGCTTCGGCGCTGTCTGCGAGCCCAGCGCAGACGAGCCGGGCCGAGCCTCCTGCGTGTGCAAGAAGAGCTCCTGCCCCAGCGTGGTGGCGCCCGTGTGCGGCTCGGATGCCTCCACCTACAGCAACGAGTGCGAGCTGCAGCGGGCGCAGTGCAGCCAGCAGAGGCGCATCCGTTTGCTGCGCCGCGGGCCCTGCG
Seq A exon
GGACCCGGGACCCCTGCTCCAATGTCACCTGCAGCTTTGGCAGCACCTGTGTGCCTTCTGCGGATGGACTGACAGCCACGTGCCTGTGCCCTGCCACGTGCCTGGGGGCCCCGGAAGGCCCTGTGTGCGGCAGCGACGGCAGTGACTACCCCAGCGAGTGCCAGCTCTTACGCCACGCCTGTGCCCACCAAGAGAACATCTTCAAGAAGTTCGACGGTCCTTGCG
Seq C2 exon
ACCCCTGCCAGGGCTTCCTCAGTGACCTGAGCCGTACCTGCCGTGTGAACCCACGCACGCGGCGGCCGGAGATGCTCCTGCGACCAGAGAGCTGCCCTCCCCGTGGGACACCTGTGTGTGGGGACGACGGGGTTACTTACGATAATGACTGCGTCATGGGCCGAACAGGGGCTGCTCAAGGCATCCTCCTGCAGAAAGTGCGCTCTGGCCAGTGCCAGCCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013191-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.066
Domain overlap (PFAM):
C1:
PF0764810=Kazal_2=WD(100=56.2)
A:
PF0764810=Kazal_2=WD(100=51.3)
C2:
PF0005016=Kazal_1=WD(100=72.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCTCCACCTACAGCAAC
R:
GCACTTTCTGCAGGAGGATGC
Band lengths:
292-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]