DreEX0012145 @ danRer10
Exon Skipping
Gene
ENSDARG00000079388 | agrn
Description
agrin [Source:ZFIN;Acc:ZDB-GENE-030131-1033]
Coordinates
chr23:23794910-23827955:+
Coord C1 exon
chr23:23794910-23795125
Coord A exon
chr23:23815075-23815299
Coord C2 exon
chr23:23827731-23827955
Length
225 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTTTCAATTTTCAGCCC
3' ss Score
9.55
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GTTGCAGAGGGAAGTTGTGCGGATTTGGAGCGGTGTGTGAGAGAGACCAAGCTGACCCATCTAAAGGAGAGTGTGTGTGTAAGAAGATTGTGTGTACATCTGTGGTGGCGCCAGTGTGCGGATCTGACTCCTCCACCTATTCCAATGAGTGTGAGCTGGAGAAGGCTCAGTGCAATACACAGAGACGCATCAAGGTGATGCGCAAAGGCCCCTGCG
Seq A exon
CCCTCAAGGACCCGTGCAGTGAGGTAACCTGTAGCTTTGGCAGCACCTGCATCCAGTCATCGGATGGTCTGTCCGCCAAGTGTATGTGTCCTCTGAGCTGTGAAAACGTCCCCAAGCATGTGGTGTGTGGCAGTGACGGCCTGGACTACCAAAGCGAATGTGAACTCAACATGAAGGCCTGCGCCACTCAGAAGAACATCCGTGTGCATCACCAGGGCCGCTGCG
Seq C2 exon
ATCCTTGCAGTGACACTCTGAACAGCTTAAGCACAGCCTGTCGAGTCAACCCAAAGACCTACCAGCAGATTACCTTTGCCCCGGCTGAGTCTTGTCCGCCTGACGAAATGCCCATCTGTGCCAGCGACGGACACACCTACGAGAGCATGTGTCAGATGGAGCGCACTGCCCTGAAGAACAACCTGGAGCTCAAAAAGGTCTCTTTAGGCAGCTGCAAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079388_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764810=Kazal_2=WD(100=56.2)
A:
PF0764810=Kazal_2=WD(100=56.6)
C2:
PF0764810=Kazal_2=WD(100=53.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGACCAAGCTGACCCA
R:
ACAGATGGGCATTTCGTCAGG
Band lengths:
297-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]