RnoEX6024919 @ rn6
Exon Skipping
Gene
ENSRNOG00000020205 | Agrn
Description
agrin [Source:RGD Symbol;Acc:2067]
Coordinates
chr5:173604050-173604875:-
Coord C1 exon
chr5:173604660-173604875
Coord A exon
chr5:173604366-173604590
Coord C2 exon
chr5:173604050-173604274
Length
225 bp
Sequences
Splice sites
3' ss Seq
CCCCACCTGCACACCCACAGGGT
3' ss Score
6.17
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
TATGCAGGGGAATGTTATGTGGCTTTGGTGCTGTGTGTGAACCTAGTGTTGAGGATCCAGGCCGTGCCTCCTGTGTGTGCAAGAAGAATGCTTGCCCTGCTACGGTGGCTCCTGTGTGTGGCTCAGATGCCTCCACCTATAGCAACGAGTGCGAGCTGCAGCGCGCGCAGTGCAACCAGCAACGGCGCATCCGCCTGCTTCGCCAAGGGCCATGTG
Seq A exon
GGTCCCGGGACCCCTGTGCCAACGTGACCTGCAGTTTCGGTAGTACCTGTGTACCTTCGGCTGACGGACAGACTGCCTCATGTCTGTGTCCTACAACCTGCTTCGGGGCCCCTGATGGCACAGTGTGTGGCAGTGACGGTGTTGACTACCCTAGTGAATGCCAGCTGCTTAGTCATGCCTGTGCCAGCCAGGAGCACATCTTCAAGAAGTTCAATGGTCCTTGTG
Seq C2 exon
ATCCCTGCCAGGGCAGCATGTCAGACCTGAACCACATTTGCCGTGTGAACCCACGTACACGGCACCCAGAAATGCTTCTGCGGCCTGAGAACTGCCCTGCCCAGCACACGCCTATCTGTGGAGATGATGGGGTCACCTATGAAAACGACTGTGTCATGAGCCGTATAGGTGCAACCCGTGGCCTGCTTCTCCAGAAAGTACGCTCTGGTCAATGCCAAACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020205-'13-7,'13-5,15-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=WD(100=65.8)
A:
PF0005016=Kazal_1=WD(100=68.4)
C2:
PF0005016=Kazal_1=WD(100=73.7),PF0005016=Kazal_1=PU(2.8=2.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCCACCTATAGCAACGA
R:
TTGGCATTGACCAGAGCGTAC
Band lengths:
307-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]