HsaEX0003162 @ hg19
Exon Skipping
Gene
ENSG00000188157 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:329]
Coordinates
chr1:970657-978837:+
Coord C1 exon
chr1:970657-970704
Coord A exon
chr1:976553-976777
Coord C2 exon
chr1:978619-978837
Length
225 bp
Sequences
Splice sites
3' ss Seq
CGGCAAAGCCCCGCCCGCAGGCT
3' ss Score
2.07
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATAAACCCGGGACCCACTTCACTCCAGTGCCTCCGACGCCTCCTGATG
Seq A exon
GCTCGCGGGACCCCTGCTCCAACGTGACCTGCAGCTTCGGCAGCACCTGTGCGCGCTCGGCCGACGGGCTGACGGCCTCGTGCCTGTGCCCCGCGACCTGCCGTGGCGCCCCCGAGGGGACCGTCTGCGGCAGCGACGGCGCCGACTACCCCGGCGAGTGCCAGCTCCTGCGCCGCGCCTGCGCCCGCCAGGAGAATGTCTTCAAGAAGTTCGACGGCCCTTGTG
Seq C2 exon
ACCAGGCCCCGTCCCCATGCCTCGGGGTGCAGTGTGCATTTGGGGCGACGTGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATGCCTGCAGGCGTGCTCGAGCCTCTACGATCCTGTGTGCGGCAGCGACGGCGTCACATACGGCAGCGCGTGCGAGCTGGAGGCCACGGCCTGTACCCTCGGGCGGGAGATCCAGGTGGCGCGCAAAGGACCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188157_MULTIEX2-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0314610=NtA=PD(1.6=11.8)
A:
PF0764810=Kazal_2=WD(100=55.3)
C2:
PF0764810=Kazal_2=WD(100=55.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAACCCGGGACCCACTTCA
R:
CACAGGGTCCTTTGCGCG
Band lengths:
267-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)