GgaEX1007038 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2733970-2736563:-
Coord C1 exon
chr21:2736348-2736563
Coord A exon
chr21:2735239-2735463
Coord C2 exon
chr21:2733970-2734194
Length
225 bp
Sequences
Splice sites
3' ss Seq
ACTATGCACCCTCTCCTCAGGCT
3' ss Score
8.5
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CCTGCCGAGGGATGCTGTGTGGGTTCGGGGCGGTGTGCGAGCGCAGCCCCACTGACCCCTCCCAAGCCTCCTGTGTCTGCAAGAAGACAGCTTGCCCTGTGGTGGTGGCTCCTGTCTGCGGCTCCGACTATTCCACCTACAGCAACGAGTGTGAGCTGGAGAAAGCCCAGTGCAACCAGCAGAGGCGGATCAAGGTCATCAGCAAGGGACCATGTG
Seq A exon
GCTCCAAGGACCCCTGTGCAGAGGTGACGTGCAGCTTTGGCAGCACGTGCGTCCGCTCTGCAGATGGCCAGACGGCCAGGTGTGTGTGCCCCGCATCCTGCAGCGGTGTGGCTGAGAGCATCGTCTGCGGCAGTGATGGCAAGGACTACCGCAGTGAGTGCGACCTCAACAAGCACGCCTGTGACAAGCAGGAGAATGTCTTCAAGAAGTTTGATGGAGCCTGCG
Seq C2 exon
ACCCCTGTAAGGGCATCCTCAACGACATGAACCGTGTGTGCCGGGTGAACCCCCGCACCCGCCGGGTGGAGCTGCTCTCCCGCCCCGAGAACTGTCCCTCAAAGAGGGAGCCAGTGTGCGGTGACGATGGGGTGACGTATGCCAGTGAGTGTGTGATGGGGCGCACGGGGGCCATCCGGGGGCTGGAGATCCAGAAGGTGCGCTCTGGGCAGTGCCAGCACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'19-18,'19-16,20-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=WD(100=76.7)
A:
PF0005016=Kazal_1=WD(100=73.7)
C2:
PF0005016=Kazal_1=WD(100=68.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTGTGTCTGCAAGAAG
R:
CACTCACTGGCATACGTCACC
Band lengths:
302-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]