MmuEX0004298 @ mm10
Exon Skipping
Gene
ENSMUSG00000041936 | Agrn
Description
agrin [Source:MGI Symbol;Acc:MGI:87961]
Coordinates
chr4:156178783-156179608:-
Coord C1 exon
chr4:156179393-156179608
Coord A exon
chr4:156179098-156179322
Coord C2 exon
chr4:156178783-156179007
Length
225 bp
Sequences
Splice sites
3' ss Seq
CCCCACCCGCACACCCACAGGGT
3' ss Score
5.54
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
TGTGCAGGGGAATGTTATGTGGCTTTGGTGCTGTGTGTGAACCTAGTGTTGAGGATCCAGGCCGGGCCTCCTGTGTGTGCAAGAAGAATGTCTGCCCTGCTATGGTAGCTCCTGTGTGTGGCTCAGATGCTTCCACCTATAGCAACGAGTGTGAGCTACAGCGTGCACAGTGCAACCAGCAACGGCGCATCCGCCTACTCCGCCAAGGGCCATGTG
Seq A exon
GGTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTTTCGGTAGTACCTGTGTACCTTCAGCCGATGGACAGACCGCCTCGTGTCTGTGTCCTACAACCTGCTTTGGGGCCCCTGATGGCACAGTGTGTGGCAGTGATGGTGTTGACTACCCTAGTGAGTGCCAGCTGCTCCGTCATGCCTGTGCCAACCAGGAGCACATCTTTAAGAAGTTCGATGGTCCTTGTG
Seq C2 exon
ACCCCTGCCAGGGCAGCATGTCAGACCTGAATCATATTTGCCGGGTGAACCCACGTACACGGCACCCAGAAATGCTTCTGCGGCCTGAGAACTGCCCCGCCCAACACACACCTATCTGTGGAGATGATGGGGTCACCTATGAAAACGACTGTGTCATGAGCCGTATAGGTGCAGCCCGTGGCCTGCTTCTCCAGAAAGTGCGCTCTGGTCAATGCCAGACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041936_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=WD(100=65.8)
A:
PF0764810=Kazal_2=WD(100=60.5)
C2:
PF0005016=Kazal_1=WD(100=73.7),PF0005016=Kazal_1=PU(2.8=2.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCAGATGCTTCCACCTA
R:
CTTTCTGGAGAAGCAGGCCAC
Band lengths:
296-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types