BtaEX6070083 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62713926-62724061:+
Coord C1 exon
chr16:62713926-62714110
Coord A exon
chr16:62714574-62714661
Coord C2 exon
chr16:62723915-62724061
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCAATGGGAATGATTGCAGACA
3' ss Score
1.05
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAGCTGAGCATGCCATTCTCAGGAGGACAAGACAGCTTTTCTAAATTTACTATGGAGATGGTTCGACAATATATGAAAGAAGAGGAAATGAGAGCAGCTCACCAGTCTTCACTCCTGCGTCTCCGTGAAAAGGCCTTGAAGGAGAAAACTAAAGCTGAACTAGCCTGGTTAGAGCATCAGAAAAA
Seq A exon
ACATCTACGAGATAAAGGTGAAGATGACAAAATGCCCCCACTCCGGAAGAAACAGCGTGGTTTGCTCTTAAGGTTGCAGCAAGAAAAG
Seq C2 exon
GCAGAAATTAAACGTCTTCAAGAAGCCAATAAGGCAGCTCGGAAGGAAAGACAACTGATTCTTAAACAGCAGGAGGAGATAGAAAGGATCCGACAGACCACCATAAAACTGCAGGAAAAGTTGAAATCTGCAGGGGAGAATAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082-'27-36,'27-35,28-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=0.933 C2=0.796
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGAAAAGGCCTTGAAGGA
R:
ATGGTGGTCTGTCGGATCCTT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]