MmuEX0010976 @ mm10
Exon Skipping
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:155897435-155901624:-
Coord C1 exon
chr1:155901440-155901624
Coord A exon
chr1:155900786-155900873
Coord C2 exon
chr1:155897435-155897581
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGAAAGACTATGCTTTTCAGGCA
3' ss Score
2.38
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GAGCTGAGCATGCCATTCTCAGGAGGACAGGATAGCTTTTCTAAGTTCACCATGGAGATGGTGCGGCAGTACATGAAGGAAGAGGAAGTGCGCGCAGCTCACCAGTCCTCACTTCTGCGTCTTCGAGAAAAGGCCTTAAAGGAGAAGACAAAGGCCGAACTAGCCTGGCTAGAGCATCAGAAAAA
Seq A exon
GCATCTACGAGACAAAGGAGAGGATGATAAGATGCCCCCACTCCGGAAGAAACAGCGTGGTTTGCTTTTAAGACTTCAGCAAGAAAAG
Seq C2 exon
GCAGAAATCAAACGTCTTCAAGAAGCCAATAAGGCAGCCCGGAAAGAGAGGCAGCTGATCCTTAAGCAGCAGGAGGAGATCGAGAGGATCCGCCAGACCACCATAAAACTGCAGGAGAAGCTCAAGTCTGCAGGGGAGAAGAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-'37-43,'37-42,38-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.661 A=0.800 C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCACTTCTGCGTCTTCG
R:
CGGATCCTCTCGATCTCCTCC
Band lengths:
173-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types