GgaEX1014802 @ galGal4
Exon Skipping
Gene
ENSGALG00000003955 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr8:6009889-6011141:-
Coord C1 exon
chr8:6010957-6011141
Coord A exon
chr8:6010401-6010488
Coord C2 exon
chr8:6009889-6010035
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCAATCTGTTTGCAGGCA
3' ss Score
10.25
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GAGCTAAGCATGCCTTTCTCAGGAGGGCAAGATAGTTTCTCTAAATTTACTATGGAGATGGTAAGACAGTACATGAAGGAGGAGGAAATGCGAGCAGCTCATCAGTCCTCACTACTTCGGCTCCGGGAGAAGGCTCTGAAGGAGAAGACAAAGGCTGAGTTAGCTTGGTTGGAACACCAGAAGAA
Seq A exon
GCATTTGCGAGACAAGGGAGAGGATGATAAGATGCCCCCTATTCGAAAGAGGCAGCGTGGTCTTCTGCTGAGACTACAGCAGGAAAAG
Seq C2 exon
GCAGAAATTAAGCGTCTGCAAGAGGCTAACAAGGCTGCTCGGAAGGAGAGACAGCTAATCCTTAAACAGCAGGCAGAAATAGAACGAATCCGTCAGACTACAATGAAACTGCAGGAAAAACTGAAATCTGCAGGAGAAAACAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955-'26-28,'26-27,27-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=0.767 C2=0.765
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGGAGGAAATGCGAGC
R:
TAGCTGTCTCTCCTTCCGAGC
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]