HsaEX0014796 @ hg38
Exon Skipping
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:180053750-180062366:+
Coord C1 exon
chr1:180053750-180053934
Coord A exon
chr1:180054415-180054502
Coord C2 exon
chr1:180062220-180062366
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATGAAAAATATTATTTGCAGACA
3' ss Score
4.53
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAACTGAACATGCCATTCTCAGGAGGACAAGATAGCTTTTCTAAATTTACTATGGAGATGGTTCGACAGTATATGAAAGAGGAAGAAATGAGGGCAGCTCACCAGTCTTCACTCCTGCGTCTCCGTGAAAAGGCCTTGAAGGAGAAGACTAAGGCTGAATTGGCCTGGTTAGAGCATCAAAAAAA
Seq A exon
ACATCTACGAGACAAAGGAGAGGATGATAAAATGCCCCCGCTCCGGAAGAAACAGCGTGGTTTGCTTTTAAGGTTGCAGCAAGAAAAG
Seq C2 exon
GCAGAAATAAAACGTCTTCAAGAAGCCAATAAGGCAGCTCGGAAGGAAAGACAGCTGATTCTTAAACAGCAGGAGGAGATAGAAAAGATCCGACAGACCACCATAAAACTACAGGAGAAATTGAAGTCTGCAGGGGAGAGTAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.927 C2=0.661
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAATTGGCCTGGTTAGA
R:
ACTCTCCCCTGCAGACTTCAA
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development