HsaEX0014796 @ hg19
Exon Skipping
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:24238]
Coordinates
chr1:180022885-180031501:+
Coord C1 exon
chr1:180022885-180023069
Coord A exon
chr1:180023550-180023637
Coord C2 exon
chr1:180031355-180031501
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATGAAAAATATTATTTGCAGACA
3' ss Score
4.53
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAACTGAACATGCCATTCTCAGGAGGACAAGATAGCTTTTCTAAATTTACTATGGAGATGGTTCGACAGTATATGAAAGAGGAAGAAATGAGGGCAGCTCACCAGTCTTCACTCCTGCGTCTCCGTGAAAAGGCCTTGAAGGAGAAGACTAAGGCTGAATTGGCCTGGTTAGAGCATCAAAAAAA
Seq A exon
ACATCTACGAGACAAAGGAGAGGATGATAAAATGCCCCCGCTCCGGAAGAAACAGCGTGGTTTGCTTTTAAGGTTGCAGCAAGAAAAG
Seq C2 exon
GCAGAAATAAAACGTCTTCAAGAAGCCAATAAGGCAGCTCGGAAGGAAAGACAGCTGATTCTTAAACAGCAGGAGGAGATAGAAAAGATCCGACAGACCACCATAAAACTACAGGAGAAATTGAAGTCTGCAGGGGAGAGTAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-'34-39,'34-36,35-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.768 A=0.954 C2=0.837
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAATTGGCCTGGTTAGA
R:
ACTCTCCCCTGCAGACTTCAA
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)