DreEX6048817 @ danRer10
Exon Skipping
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14538266-14540756:-
Coord C1 exon
chr8:14540569-14540756
Coord A exon
chr8:14539221-14539308
Coord C2 exon
chr8:14538266-14538412
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCATCTTCATCTTCCTCCAGGCG
3' ss Score
9.91
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CAGGATGGCAGCATGCCCTTCTCCAGCGGCCAGGACAGCTTCTCCAAGTTCACCATGGACTTGGTGCGCCAGTACATGAAGGAGGAGGAGGTTCGTGCTCAGCATCAGAGTTCTCTGCTGCGTCTGCGTGAAAAAGCCCTCAGAGAGAAGACCAAGGCTGAAGTGGCCTGGCTGGAGCACCAGAAGAG
Seq A exon
GCGTCTTCGGGATAAAGGAGAGGATGATAAAATGCCCCCACTTCGTAAGAAACAGAGAGGCCTGATAATGAAACTGCAGCAGGAACAG
Seq C2 exon
GCGGAGATTAAACGACTCCAGGAGGCCAATAAAGCAGCGAGAAGAGAGAGACAGCTGCTCCTCAAACAGCAGGAGGAGATTGAGAGAATGAGACACACAACCCTCAAACTCAAAGAGCGACTCAAGACTGCTGGAGACACAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000-'26-36,'26-35,28-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=1.000 C2=0.929
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAGGAGGAGGTTCGTG
R:
TGAGGAGCAGCTGTCTCTCTC
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]