RnoEX6044849 @ rn6
Exon Skipping
Gene
ENSRNOG00000003882 | Cep350
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73545884-73549606:-
Coord C1 exon
chr13:73549422-73549606
Coord A exon
chr13:73548780-73548867
Coord C2 exon
chr13:73545884-73546030
Length
88 bp
Sequences
Splice sites
3' ss Seq
TAAAAGAATATGCTTTGCAGGCA
3' ss Score
2.68
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GAGCTGAGCATGCCATTCTCAGGAGGACAGGATAGCTTTTCCAAGTTCACTATGGAGATGGTGCGACAGTATATGAAGGAAGAGGAAGTGCGTGCAGCTCACCAGTGCTCACTTCTGCGTCTCCGAGAAAAGGCCTTAAAGGAGAAGACAAAGGCCGAATTAGCCTGGCTGGAGCATCAAAAAAA
Seq A exon
GCATCTACGAGACAAAGGCGAGGATGATAAGATGCCCCCACTCCGGAAGAAACAGCGTGGTCTGCTTTTAAGACTTCAGCAAGAAAAG
Seq C2 exon
GCAGAAATAAAACGTCTTCAAGAAGCCAATAAGGCAGCTCGGAAGGAAAGGCAACTGATTCTTAAGCAGCAGGAAGAGATAGAAAGGATCCGTCAGACCACCATAAAACTGCAAGAGAAGTTGAAGTCTGCGGGGGAGAATAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882-'34-43,'34-42,36-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.331 A=0.867 C2=0.776
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000005235fB2927
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTCTGCGTCTCCGAGAA
R:
ATGGTGGTCTGACGGATCCTT
Band lengths:
181-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]