BtaEX6070097 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62642985-62647503:+
Coord C1 exon
chr16:62642985-62643031
Coord A exon
chr16:62646399-62646513
Coord C2 exon
chr16:62647344-62647503
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGATGGTGTTTAAACTTTAGCTG
3' ss Score
4.91
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CAGATATAACCGCACCATGGGATGCACTTTCTCAGACCAAGGCTGCT
Seq A exon
CTGAGACACATTGAAAACAAATTGGAAGTAGCCCCTACAAGTACAGCTGTGTTTGATTCTGTCATGGATACCAAGAAATCTTCTGCAAGTGCTACCAGAAAAATTAGTAGAAAAG
Seq C2 exon
ATGGTAGATACCTGGATGATTCTTGGGTTAATGCTCCAGCCTCCAAATTTTCTAAATCACGAAAAGAGAAATCTCGTAGTCCTCTCAGAGCTACCACCCTGGAGAGTAATGTAAAAAAAATTAATCGTGTGGAGTTTCGTGACCCTTTGGTTTCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082-'1-5,'1-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.667 C2=0.389
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATAACCGCACCATGGGATGC
R:
CCAAAGGGTCACGAAACTCCA
Band lengths:
194-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]