DreEX0020923 @ danRer10
Exon Skipping
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14564951-14566271:-
Coord C1 exon
chr8:14566228-14566271
Coord A exon
chr8:14565599-14565713
Coord C2 exon
chr8:14564951-14565107
Length
115 bp
Sequences
Splice sites
3' ss Seq
TAATTGTGGTCTTGTCTCAGTTG
3' ss Score
5.02
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AGATATCTCAAGCCTGGAATTGTATAAATCAGACCAAAGCTGCC
Seq A exon
TTGCGACACATTGAGAATCGTCTAGAGGCATCACCAGGCTCTGGAGTGCTTCTGGACTCCGTGCTAGACACAAAGAAGTCATCTGTGAGTGGCGGTCGGAAAATAAGCCGCAGAG
Seq C2 exon
ACGGGCGTCATGTGGAGGAAAGTGGGTCCAAGTCCAGAACGCGGAGTCGACGCAGTCCAGACAAAAGTTCCCGCAGTCCCTTGAGGAACAGCACTTTGGACAGCAATGCCAGGAAACCCAGTGCCGTGGAATTCAGAGAACCACTCGCTTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.923 C2=0.962
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATATCTCAAGCCTGGAATTGT
R:
AAGCGAGTGGTTCTCTGAATTCC
Band lengths:
194-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]