MmuEX6028412 @ mm10
Exon Skipping
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:155958561-155961187:-
Coord C1 exon
chr1:155961144-155961187
Coord A exon
chr1:155959720-155959831
Coord C2 exon
chr1:155958561-155958720
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCATGGTATTCAAATTTTAGCTG
3' ss Score
5.26
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGTAACCACATCATGGGATGCACTTTCTCAGACCAAGGCTGCT
Seq A exon
CTGAGACACATTGAGAACAAATTAGAAGTAACTCCTACAAGCACAGCTGTAATCGATTCTGTGATGGATACTAAGAAGTCTGCAAGTGCTACCCGAAAAATAAGTAGGAAAG
Seq C2 exon
ATGGGAGATGTCTAGATGATTCTTGGGCCAGTGCTCCAACTTCCAAATTTTCCAAACCACGGAAAGAGAAATCCCGTAGTCCTCTCAGGGCTACCACCCTGGAAAGTAATGTTAAGAAAAACAATCGTGTGGAGTTCCGTGAACCTTTGGTTTCTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=0.888 C2=0.767
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATGGGATGCACTTTCTCAGA
R:
TATAAGAAACCAAAGGTTCACGGA
Band lengths:
194-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types