GgaEX7006772 @ galGal4
Exon Skipping
Gene
ENSGALG00000003955 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr8:6031767-6033793:-
Coord C1 exon
chr8:6033750-6033793
Coord A exon
chr8:6032688-6032802
Coord C2 exon
chr8:6031767-6031899
Length
115 bp
Sequences
Splice sites
3' ss Seq
GCATTATCTTCAAATTCTAGCTA
3' ss Score
6.18
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATCCAGCTGCAGCATGGACTACTCTTTCTCAGACTAAGGCTGCT
Seq A exon
CTACGGCATATAGAGAACAAATTGGAAATAGCTCCCACCAGCACAGCTGTGTTTGATTCTGTCATGGATGCCAAGAAGCCCTCTGCTAGTACAAGCAGGAAAATAAGCAGGAAAG
Seq C2 exon
CTTCCCGGTCTTCCAGCCAAACTAAATCAGGTAAGGAGAAGTCCTCGCGCAGTCCTCTTCGAGCGACGACCCTTGAAAGCAATGTGAAAAAAAGCAACCGGGTGGAATTTCGTGAACCACTGGCTTCGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.846 C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCAGCATGGACTACTC
R:
TGTACGAAGCCAGTGGTTCAC
Band lengths:
173-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]