HsaEX0014805 @ hg19
Exon Skipping
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:24238]
Coordinates
chr1:179956375-179961356:+
Coord C1 exon
chr1:179956375-179956421
Coord A exon
chr1:179959642-179959756
Coord C2 exon
chr1:179961197-179961356
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGATGGTGTTTAAACTTTAGCTG
3' ss Score
4.91
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CAGATATAACCACATCGTGGGATGCACTTTCTCAAACCAAGGCTGCT
Seq A exon
CTGAGACACATTGAAAATAAATTAGAAGTAGCCCCTACAAGTACAGCTGTGTGTGATTCTGTCATGGATACCAAGAAGTCTTCTACAAGTGCTACTCGAAAAATAAGTAGAAAAG
Seq C2 exon
ATGGTAGATACCTGGATGATTCTTGGGTTAATGCTCCAATCTCCAAATCCACTAAATCACGAAAAGAGAAATCTCGTAGTCCTCTCAGGGCCACCACCCTGGAGAGTAATGTGAAGAAAAATAATCGTGTGGAATTTCGTGAACCTTTGGTTTCTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.792 C2=0.582
Domain overlap (PFAM):
C1:
NO
A:
PF123953=DUF3658=FE(48.1=100)
C2:
PF123953=DUF3658=PD(13.9=20.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGGGATGCACTTTCTCA
R:
CTATAAGAAACCAAAGGTTCACGAA
Band lengths:
195-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)