MmuEX6028412 @ mm9
Exon Skipping
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:157805691-157809690:-
Coord C1 exon
chr1:157809605-157809690
Coord A exon
chr1:157806850-157806961
Coord C2 exon
chr1:157805691-157805850
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCATGGTATTCAAATTTTAGCTG
3' ss Score
5.26
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTAAATTGGCAAGATGAGGAGCAGCAAGTCAAAAGAGGTGCCTTTACCAAATCCCAGGAACTCTCAGAGCAAGGAGACTATTCAAG
Seq A exon
CTGAGACACATTGAGAACAAATTAGAAGTAACTCCTACAAGCACAGCTGTAATCGATTCTGTGATGGATACTAAGAAGTCTGCAAGTGCTACCCGAAAAATAAGTAGGAAAG
Seq C2 exon
ATGGGAGATGTCTAGATGATTCTTGGGCCAGTGCTCCAACTTCCAAATTTTCCAAACCACGGAAAGAGAAATCCCGTAGTCCTCTCAGGGCTACCACCCTGGAAAGTAATGTTAAGAAAAACAATCGTGTGGAGTTCCGTGAACCTTTGGTTTCTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-'3-5,'3-4,5-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.873 C2=0.722
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCAAGATGAGGAGCAGC
R:
CTATAAGAAACCAAAGGTTCACGGA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: