RnoEX6044836 @ rn6
Exon Skipping
Gene
ENSRNOG00000003882 | Cep350
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73618021-73620613:-
Coord C1 exon
chr13:73620570-73620613
Coord A exon
chr13:73619373-73619484
Coord C2 exon
chr13:73618021-73618180
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTATGGTATTTGAACTTCAGCTG
3' ss Score
4.24
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
ATGTAACCACATCATGGGATGCACTTTCTCAGACCAAGGCTGCT
Seq A exon
CTGAGACACATTGAGAACAAATTGGAAGTAGCGCCTACCAGTACAGCTGTGATCGATTCTGTGATGGATGCTAAGAAGTCCGCAAGTGCTACCCGGAAAATAAGTAGGAAAG
Seq C2 exon
ATGGTAGATGTCTAGATGATTCTTGGGTCAGTGCTCCAACTTCCAAATTTTCTAAACCACGGAAAGAGAAATCTCGTAGTCCTCTTAGGGCTACTACCCTGGAAAGTAATGTCAAGAAAAACAATCGTGTGGAGTTCCGTGAACCTTTGGTTTCTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.665 A=0.763 C2=0.559
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATGGGATGCACTTTCTCAGA
R:
TATAAGAAACCAAAGGTTCACGGA
Band lengths:
194-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]