BtaEX6070978 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008153 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr16:81323419-81326913:+
Coord C1 exon
chr16:81323419-81323639
Coord A exon
chr16:81326005-81326077
Coord C2 exon
chr16:81326798-81326913
Length
73 bp
Sequences
Splice sites
3' ss Seq
AATCTGTCGTGTCTTTTCAGTCT
3' ss Score
8.33
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCGCAGGACGGAGGAGGAGCGGCAGAAGAAGGAGGACGAGCGGGCGCGCCGTGAGTTCATCCGGCAGGAGTACCTGCGGCGCAAGCAGCTGAAGCTCATGGAAGACATGGACAGCGTCCTCAAGCCCCGGCCTCAGGTGGCCCGGCAGAAGAAGCAGCGGCCCAAGTCCATCCACAGGGACCACCTCGAGTCCCCCAAGACGCCCGTGAAAGGTCCCCCAG
Seq A exon
TCTCGAGCCTTTCTCTGGCATCACTGAACACGGGCGATAACGAAAGCTTGCAGTCAGGGAAGAGGACCCCGAG
Seq C2 exon
GTCAGAGTCTGTAGAAGGCTTCTTATCTCCAAGCCGGTGTGGCAGCCGGAACGGTGAGAAGGACTGGGAGAACGCATCCACCACGTCGTCCGTGGCCTCAGGGACGGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008153-'20-27,'20-25,21-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=1.000 C2=0.925
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGCTCATGGAAGACAT
R:
CCACACCGGCTTGGAGATAAG
Band lengths:
176-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]