GgaEX1012726 @ galGal3
Exon Skipping
Gene
ENSGALG00000002145 | CAMSAP2
Description
NA
Coordinates
chr8:1379781-1381830:-
Coord C1 exon
chr8:1381610-1381830
Coord A exon
chr8:1380486-1380558
Coord C2 exon
chr8:1379781-1379896
Length
73 bp
Sequences
Splice sites
3' ss Seq
GCTTTATCGTGTTTTTTCAGTAT
3' ss Score
8.04
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACGCAAAACAGAAGAAGAACGTCAGAAGAAGGAGGATGAACGAGCACGGCGAGAATTCATTAAGCAGGAATACATGAGAAGGAAACAACTAAAGCTTATGGAAGAAATGGATACTGTTATAAAACCACGTTCCCTGTCAATCAAACAAAAAAAGCCACGTCCAAAATCTATTCATAGGGATCACATTGAGTCACCTAAGACACCGGTCAAAGGTCCACCAG
Seq A exon
TATCTAGTCTTTCACTGGCATCGCTGAATACAGGGGACAATGAGAGTGTGCAGTCAGGCAAGAGAACGCCAAG
Seq C2 exon
ATCTGAGTCTGTGGAAGGTTTCTTATCTCCAAGTCGCTGTGGTAGTCGTAATGGTGAAAAAGATTGGGAAAATGCATCTACAACTTCTTCAGTTGCCTCTGCTACAGAATATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145-'21-25,'21-24,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=1.000 C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACGTTCCCTGTCAATCAA
R:
TGCATTTTCCCAATCTTTTTCACCA
Band lengths:
174-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]