MmuEX6027791 @ mm9
Exon Skipping
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138170327-138173335:-
Coord C1 exon
chr1:138173115-138173335
Coord A exon
chr1:138171378-138171450
Coord C2 exon
chr1:138170327-138170442
Length
73 bp
Sequences
Splice sites
3' ss Seq
AATTTCTCGTGTTTTTTCAGTCT
3' ss Score
7.91
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACGAAAAACTGAAGAAGAACGTCAGAAGAAGGAAGACGAGCGAGCACGGAGAGAGTTTATCAGGCAGGAATACATGAGGAGGAAACAGCTGAAACTGATGGAAGACATGGATACAGTAATCAAGCCTCGACCTCAGGCGGCTAAACAGAAAAAACAGCGGCCAAAATCCATTCACAGAGATCATATTGAATCTCCCAAAACACCGATCAAAGGCCCTCCAG
Seq A exon
TCTCTAGCCTCTCATTGGCATCGCTGAACACAGGTGATAGCGAGAGTGTTCATTCGGGCAAGAGGACGCCAAG
Seq C2 exon
GTCGGAGTCTGTAGAAGGCTTCTTATCTCCAAGTCGTTGTGGCAGTCGGAATGGCGAGAAAGACTGGGAAAACGCATCCACAACTTCTTCGGTGGCTTCTGGAACAGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-'17-24,'17-22,18-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.977 A=0.972 C2=0.942
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGCCAAAATCCATTCACA
R:
CTGTTCCAGAAGCCACCGAAG
Band lengths:
173-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: