RnoEX0016543 @ rn6
Exon Skipping
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53151455-53154412:-
Coord C1 exon
chr13:53154192-53154412
Coord A exon
chr13:53152514-53152586
Coord C2 exon
chr13:53151455-53151570
Length
73 bp
Sequences
Splice sites
3' ss Seq
AATTTACCGTGTTTTTTCAGTCT
3' ss Score
7.35
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCGAAAAACTGAGGAAGAACGTCAGAAGAAAGAGGACGAGCGGGCACGGAGAGAATTCATTAGGCAGGAGTACATGAGGCGAAAGCAGCTGAAGCTAATGGAGGACATGGACACAGTAATCAAGCCTCGGCCTCAGGTGGCAAAACAGAAAAAACAGCGGCCAAAATCTATTCACAGAGATCATATTGAATCTCCCAAAACACCAATCAAAGGCCCTCCAG
Seq A exon
TCTCTAGCCTCTCTCTGGCATCGCTGAACACAGGTGATACCGAGAGTGTTCATTCAGGCAAGAGGACACCAAG
Seq C2 exon
GTCAGAGTCTGTAGAAGGCTTCTTATCTCCAAGTCGCTGTGGCAGTCGGAATGGCGAGAAAGACTGGGAAAACGCATCCACGACCTCTTCAGTGGCTTCTGGAACAGAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741-'24-32,'24-29,25-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=1.000 C2=0.975
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATCAAGCCTCGGCCTCAG
R:
CCCAGTCTTTCTCGCCATTCC
Band lengths:
174-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]