DreEX0018715 @ danRer10
Exon Skipping
Gene
ENSDARG00000062173 | camsap2a
Description
calmodulin regulated spectrin-associated protein family, member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-3016]
Coordinates
chr22:22323231-22326012:-
Coord C1 exon
chr22:22325792-22326012
Coord A exon
chr22:22324377-22324467
Coord C2 exon
chr22:22323231-22323343
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTGTTTTGAATGCAGGTT
3' ss Score
7.38
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTAAAAGCAGAGGAAGAACGCCTGAAGAAAGAAGAAGAAAAGGCTCGGCGAGAATTTATAAAGCAGGAATACTTGAGGAGGAAACAACTGAAACTGATGGAGGACATGGACACGCTTGTCAAACCGCGGCCTACAGGAGCAAAGCAAAGAAAACCACGGCCTAAGTCCATCCATAGAGATGTGATGGAGTCCCCTAGGACTCCTGTCAGGGCCACAGCAG
Seq A exon
GTTCACGACCTCGTGTTTTTTCAGTTTCTAGCCTGTCTCTGGCTTCTCTTGGAGATAATGACAGCGTCAACTCCGATAAGAAAACACCCAG
Seq C2 exon
TAGGCCTGACTCAGCAGACGGATGCCTGTCGCCCACCCGCAGCCGTAACGGAGAGAAAGACTGGGAGAACGGTTCAACCACATCATCTCTGACATCCAACACTGAATACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062173-'20-20,'20-17,22-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.807 A=0.974 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTACAGGAGCAAAGCAAA
R:
GGTTGAACCGTTCTCCCAGTC
Band lengths:
172-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]